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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF66_3044ADP-heptose-LPS heptosyltransferase II. (321 aa)    
Predicted Functional Partners:
yfhL
Ferrodoxin.
 
   0.896
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
 
 
  0.867
fdx
2Fe-2S ferredoxin.
   
   0.808
rfaF
ADP-heptose--LPS heptosyltransferase 2.
 
 
 0.775
CF66_3046
Lipopolysaccharide heptosyltransferase I.
  
   
 0.694
CF66_4019
Polysaccharide deacetylase.
 
 
  0.645
CF66_3045
alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase.
 
  
 0.607
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
     
 0.588
kdsD
Arabinose 5-phosphate isomerase.
     
 0.587
phaB
acetoacetyl-CoA reductase.
    
   0.580
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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