Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsNGeneral secretion pathway protein N. (265 aa)    
Predicted Functional Partners:
epsM
General secretion pathway protein M.
 
   
 0.969
epsL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.953
epsI
General secretion pathway protein I.
 
   
 0.949
epsC
General secretion pathway protein C.
 
   
 0.938
epsH
General secretion pathway protein H.
 
     0.937
epsJ
General secretion pathway protein J.
 
     0.934
epsK
General secretion pathway protein K.
 
   
 0.905
epsD
General secretion pathway protein D.
 
   
 0.780
CF66_2356
Hypothetical protein.
  
     0.769
ycnJ
Copper transport protein.
  
     0.765
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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