Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| deaD | hrpA | CF66_2373 | CF66_5013 | Cold-shock protein; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase hrpA. | 0.999 |
| deaD | rps | CF66_2373 | CF66_2251 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.850 |
| deaD | rpsA | CF66_2373 | CF66_2351 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.999 |
| deaD | rpsB | CF66_2373 | CF66_2003 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.596 |
| deaD | rpsE | CF66_2373 | CF66_7056 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| deaD | rpsG | CF66_2373 | CF66_1002 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.588 |
| deaD | rpsL | CF66_2373 | CF66_1003 | Cold-shock protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.580 |
| hrpA | deaD | CF66_5013 | CF66_2373 | ATP-dependent RNA helicase hrpA. | Cold-shock protein; Belongs to the DEAD box helicase family. | 0.999 |
| hrpA | rps | CF66_5013 | CF66_2251 | ATP-dependent RNA helicase hrpA. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.867 |
| hrpA | rpsA | CF66_5013 | CF66_2351 | ATP-dependent RNA helicase hrpA. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.999 |
| hrpA | rpsE | CF66_5013 | CF66_7056 | ATP-dependent RNA helicase hrpA. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| hrpA | rpsG | CF66_5013 | CF66_1002 | ATP-dependent RNA helicase hrpA. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.867 |
| hrpA | rpsL | CF66_5013 | CF66_1003 | ATP-dependent RNA helicase hrpA. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.860 |
| rps | deaD | CF66_2251 | CF66_2373 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | Cold-shock protein; Belongs to the DEAD box helicase family. | 0.850 |
| rps | hrpA | CF66_2251 | CF66_5013 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | ATP-dependent RNA helicase hrpA. | 0.867 |
| rps | rpsA | CF66_2251 | CF66_2351 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.981 |
| rps | rpsB | CF66_2251 | CF66_2003 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rps | rpsE | CF66_2251 | CF66_7056 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rps | rpsF | CF66_2251 | CF66_4001 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rps | rpsG | CF66_2251 | CF66_1002 | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
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