Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001568325_00628 | M6VF50_9LEPT | GCA_001568325_00628 | GCA_001568325_03633 | Unannotated protein. | Unannotated protein. | 0.807 |
GCA_001568325_00628 | queD | GCA_001568325_00628 | GCA_001568325_00310 | Unannotated protein. | Unannotated protein. | 0.807 |
GCA_001568325_00628 | queE | GCA_001568325_00628 | GCA_001568325_02350 | Unannotated protein. | Unannotated protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.855 |
GCA_001568325_00628 | queF | GCA_001568325_00628 | GCA_001568325_00770 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.786 |
M6VA20_9LEPT | guaA | GCA_001568325_00771 | GCA_001568325_00769 | Unannotated protein. | Unannotated protein. | 0.716 |
M6VA20_9LEPT | queF | GCA_001568325_00771 | GCA_001568325_00770 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.823 |
M6VF50_9LEPT | GCA_001568325_00628 | GCA_001568325_03633 | GCA_001568325_00628 | Unannotated protein. | Unannotated protein. | 0.807 |
M6VF50_9LEPT | guaA | GCA_001568325_03633 | GCA_001568325_00769 | Unannotated protein. | Unannotated protein. | 0.409 |
M6VF50_9LEPT | queC | GCA_001568325_03633 | GCA_001568325_00309 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.867 |
M6VF50_9LEPT | queD | GCA_001568325_03633 | GCA_001568325_00310 | Unannotated protein. | Unannotated protein. | 0.948 |
M6VF50_9LEPT | queE | GCA_001568325_03633 | GCA_001568325_02350 | Unannotated protein. | Unannotated protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.994 |
M6VF50_9LEPT | queF | GCA_001568325_03633 | GCA_001568325_00770 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.817 |
M6W0I4_9LEPT | queF | GCA_001568325_02237 | GCA_001568325_00770 | Unannotated protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.771 |
cysD | queF | GCA_001568325_02695 | GCA_001568325_00770 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.635 |
guaA | M6VA20_9LEPT | GCA_001568325_00769 | GCA_001568325_00771 | Unannotated protein. | Unannotated protein. | 0.716 |
guaA | M6VF50_9LEPT | GCA_001568325_00769 | GCA_001568325_03633 | Unannotated protein. | Unannotated protein. | 0.409 |
guaA | queD | GCA_001568325_00769 | GCA_001568325_00310 | Unannotated protein. | Unannotated protein. | 0.409 |
guaA | queE | GCA_001568325_00769 | GCA_001568325_02350 | Unannotated protein. | Unannotated protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.480 |
guaA | queF | GCA_001568325_00769 | GCA_001568325_00770 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.817 |
guaA | tgt | GCA_001568325_00769 | GCA_001568325_00880 | Unannotated protein. | Unannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] | 0.793 |
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