GCA_001568325_03008 protein (Leptospira noguchii)

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Score

GCA_001568325_03008

Unannotated protein. (570 aa)

Predicted Functional Partners:

M6VJ25_9LEPT

0.989

tsf

0.977

rpsF

0.965

rpsK

0.965

rplO

0.965

rpsE

0.965

rplP

0.965

rplV

0.965

rplB

0.965

rplD

0.965

Your Current Organism:

Leptospira noguchii

NCBI taxonomy Id: 28182
Other names: ATCC 43288, DSM 21520, L. noguchii, strain CZ 214

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001568325_03008	M6VJ25_9LEPT	GCA_001568325_03008	GCA_001568325_01967	Unannotated protein.	Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.989
GCA_001568325_03008	rplB	GCA_001568325_03008	GCA_001568325_03213	Unannotated protein.	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.965
GCA_001568325_03008	rplD	GCA_001568325_03008	GCA_001568325_03215	Unannotated protein.	Unannotated protein; Forms part of the polypeptide exit tunnel.	0.965
GCA_001568325_03008	rplO	GCA_001568325_03008	GCA_001568325_03198	Unannotated protein.	Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.965
GCA_001568325_03008	rplP	GCA_001568325_03008	GCA_001568325_03209	Unannotated protein.	Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.965
GCA_001568325_03008	rplV	GCA_001568325_03008	GCA_001568325_03211	Unannotated protein.	Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.965
GCA_001568325_03008	rpsE	GCA_001568325_03008	GCA_001568325_03200	Unannotated protein.	Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.965
GCA_001568325_03008	rpsF	GCA_001568325_03008	GCA_001568325_01586	Unannotated protein.	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	0.965
GCA_001568325_03008	rpsK	GCA_001568325_03008	GCA_001568325_03193	Unannotated protein.	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.965
GCA_001568325_03008	tsf	GCA_001568325_03008	GCA_001568325_00591	Unannotated protein.	Unannotated protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.977
M6VJ25_9LEPT	GCA_001568325_03008	GCA_001568325_01967	GCA_001568325_03008	Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Unannotated protein.	0.989
rplB	GCA_001568325_03008	GCA_001568325_03213	GCA_001568325_03008	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein.	0.965
rplB	rplD	GCA_001568325_03213	GCA_001568325_03215	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Forms part of the polypeptide exit tunnel.	0.999
rplB	rplO	GCA_001568325_03213	GCA_001568325_03198	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
rplB	rplP	GCA_001568325_03213	GCA_001568325_03209	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplB	rplV	GCA_001568325_03213	GCA_001568325_03211	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplB	rpsE	GCA_001568325_03213	GCA_001568325_03200	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplB	rpsF	GCA_001568325_03213	GCA_001568325_01586	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	0.987
rplB	rpsK	GCA_001568325_03213	GCA_001568325_03193	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rplB	tsf	GCA_001568325_03213	GCA_001568325_00591	Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Unannotated protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.917