STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldAGliding motility-associated ABC transporter ATP-binding subunit GldA. (297 aa)    
Predicted Functional Partners:
ybhF
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter;fragment of putative transporter fused subunits of ABC superfamily: ATP-binding components (part 2).
 
  
 0.922
GldF
Gliding motility-associated ABC transporter permease protein GldF.
 
 
 0.912
CEN41189.1
ABC-2 type transporter.
 
  
 0.870
GldG
Putative Gliding-associated ABC transporter substrate-binding component GldG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.802
CEN36449.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.542
CEN40370.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.520
CEN40440.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.511
atpD
Membrane-bound ATP synthase, F1 sector, beta-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.487
GldD
Protein involved in gliding motility GldD.
  
   
 0.478
atpA
F1 sector of membrane-bound ATP synthase, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.476
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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