Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEN36641.1RagB/SusD family protein. (640 aa)    
Predicted Functional Partners:
CEN36645.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
   0.953
CEN36637.1
Putative Conserved Exo-alpha-sialidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.864
CEN33549.1
TonB-dependent receptor plug domain protein.
 
 
   0.823
CEN41849.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   0.797
CEN37523.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
   0.794
CEN41848.1
TonB-dependent receptor plug domain protein.
  
     0.765
CEN37519.1
TonB-dependent receptor plug domain protein.
  
     0.760
CEN38080.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.759
CEN41853.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.743
CEN41856.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.722
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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