node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEN37183.1 | rplC | CCYN74_210057 | CCYN74_100177 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.569 |
CEN37183.1 | rplD | CCYN74_210057 | CCYN74_100176 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.585 |
CEN37183.1 | rplM | CCYN74_210057 | CCYN74_100048 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.574 |
CEN37183.1 | rplP | CCYN74_210057 | CCYN74_100170 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.561 |
CEN37183.1 | rplR | CCYN74_210057 | CCYN74_100161 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.561 |
CEN37183.1 | rplU | CCYN74_210057 | CCYN74_140061 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.579 |
CEN37183.1 | rplW | CCYN74_210057 | CCYN74_100175 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.561 |
CEN37183.1 | rpmD | CCYN74_210057 | CCYN74_100159 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 50S ribosomal subunit protein L30; Function of homologous gene experimentally demonstrated in an other organism; structure. | 0.560 |
CEN37183.1 | rpsC | CCYN74_210057 | CCYN74_100171 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.575 |
CEN37183.1 | rpsO | CCYN74_210057 | CCYN74_190031 | Uncharacterized ABC transporter ATP-binding protein ydiF. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.575 |
rplC | CEN37183.1 | CCYN74_100177 | CCYN74_210057 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Uncharacterized ABC transporter ATP-binding protein ydiF. | 0.569 |
rplC | rplD | CCYN74_100177 | CCYN74_100176 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplM | CCYN74_100177 | CCYN74_100048 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplP | CCYN74_100177 | CCYN74_100170 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplR | CCYN74_100177 | CCYN74_100161 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplC | rplU | CCYN74_100177 | CCYN74_140061 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
rplC | rplW | CCYN74_100177 | CCYN74_100175 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rpmD | CCYN74_100177 | CCYN74_100159 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal subunit protein L30; Function of homologous gene experimentally demonstrated in an other organism; structure. | 0.999 |
rplC | rpsC | CCYN74_100177 | CCYN74_100171 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
rplC | rpsO | CCYN74_100177 | CCYN74_190031 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.994 |