STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEN37233.1TRAP-type C4-dicarboxylate transport system, small permease component. (158 aa)    
Predicted Functional Partners:
CEN37229.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.980
CEN37237.1
Putative dicarboxylate-binding periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.980
uxaC
Uronate isomerase.
 
  
 0.839
uxuA
Mannonate hydrolase; Catalyzes the dehydration of D-mannonate.
 
     0.818
CEN37249.1
Uncharacterized oxidoreductase HI_0048.
 
    0.772
CEN37226.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.610
CEN37221.1
4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase.
       0.606
CEN37253.1
Hypothetical protein; No homology to any previously reported sequences.
       0.511
CEN37258.1
Hypothetical protein; No homology to any previously reported sequences.
       0.471
CEN37262.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.471
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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