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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEN37827.1Putative LicD family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (245 aa)    
Predicted Functional Partners:
CEN37808.1
Phosphoenolpyruvate phosphomutase.
       0.856
aepY
Phosphonopyruvate decarboxylase.
       0.855
CEN37819.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.789
CEN37823.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.784
CEN42080.1
Sialic acid aldolase; Belongs to the DapA family.
  
     0.552
CEN35123.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.455
CEN34787.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
     0.427
CEN37805.1
NAD dependent epimerase/dehydratase family protein.
       0.411
rplT
50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.402
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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