STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEN40058.1DNA-binding helix-turn-helix protein. (140 aa)    
Predicted Functional Partners:
CEN40054.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.628
CEN36360.1
Smr domain protein.
  
    0.625
gldH
Gliding motility lipoprotein GldH homolog.
  
     0.584
CEN36826.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.529
CEN39592.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.488
CEN33836.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.464
CEN40166.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.416
CEN40081.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.415
CEN36898.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.414
CEN40051.1
Regulatory protein asnC.
     
 0.407
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.