Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEN40920.1PAF-AH subunit beta (fragment). (170 aa)    
Predicted Functional Partners:
CEN34132.1
Glycosyl hydrolase family 20, catalytic domain protein.
 
      0.803
CEN38407.1
Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.717
CEN33491.1
Renin-binding protein.
 
     0.527
CEN40922.1
Hypothetical protein; No homology to any previously reported sequences.
       0.448
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
    0.434
CEN41853.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
   0.426
Your Current Organism:
Capnocytophaga cynodegmi
NCBI taxonomy Id: 28189
Other names: ATCC 49044, C. cynodegmi, CCUG 24742, CDC group DF-2 like, CIP 103937, DSM 19736, LMG 11513, LMG:11513, NCTC 12243, strain E6447
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