STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribHUnannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (156 aa)    
Predicted Functional Partners:
CJ673_05940
Unannotated protein.
 
 0.999
ribB
Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
 
 0.999
ribD
Unannotated protein.
 
 0.995
GCA_001572855_00235
Unannotated protein.
 
 0.992
CJ673_06960
Unannotated protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.977
guaB
Unannotated protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.913
CJ673_08450
Unannotated protein; Belongs to the ribF family.
  
  
 0.893
CJ673_01370
Unannotated protein; Belongs to the AdoMet synthase family.
  
 
 0.876
CJ673_06955
Unannotated protein; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).
  
  
 0.819
pyrB
Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.810
Your Current Organism:
Arcobacter cryaerophilus
NCBI taxonomy Id: 28198
Other names: A. cryaerophilus, ATCC 43158, Aliiarcobacter cryaerophilus, Arcibacter cryaerophilus, Arcobacter sp. LMG 10210, Arcobacter sp. LMG 10229, Arcobacter sp. LMG 9065, Arcobacter sp. LMG 9861, Arcobacter sp. LMG 9871, Arquibacter cryaerophilus, CCUG 17801, CIP 104014, Campylobacter cryaerophila, Campylobacter cryaerophilus, DSM 7289, LMG 24291, LMG 7536, LMG 9904, LMG:24291, LMG:7536, LMG:9904, NCTC 11885, strain 02766, strain A 169/B, strain A169/B, strain Neill A 169/B, strain Neill A1691B
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