Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ673_01285 | CJ673_04035 | GCA_001572855_00716 | GCA_001572855_01793 | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | Unannotated protein. | 0.992 |
CJ673_01285 | CJ673_07690 | GCA_001572855_00716 | GCA_001572855_00411 | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | Unannotated protein. | 0.526 |
CJ673_01285 | polA | GCA_001572855_00716 | GCA_001572855_01188 | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
CJ673_01285 | recA | GCA_001572855_00716 | GCA_001572855_00086 | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.663 |
CJ673_01285 | topA | GCA_001572855_00716 | GCA_001572855_00090 | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.669 |
CJ673_01460 | CJ673_04035 | GCA_001572855_01669 | GCA_001572855_01793 | Unannotated protein. | Unannotated protein. | 0.994 |
CJ673_01460 | CJ673_07690 | GCA_001572855_01669 | GCA_001572855_00411 | Unannotated protein. | Unannotated protein. | 0.858 |
CJ673_01460 | CJ673_08155 | GCA_001572855_01669 | GCA_001572855_01469 | Unannotated protein. | Unannotated protein. | 0.892 |
CJ673_01460 | polA | GCA_001572855_01669 | GCA_001572855_01188 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
CJ673_01460 | recA | GCA_001572855_01669 | GCA_001572855_00086 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.449 |
CJ673_01460 | xth | GCA_001572855_01669 | GCA_001572855_00324 | Unannotated protein. | Unannotated protein. | 0.919 |
CJ673_04035 | CJ673_01285 | GCA_001572855_01793 | GCA_001572855_00716 | Unannotated protein. | Unannotated protein; Belongs to the DNA mismatch repair MutS family. | 0.992 |
CJ673_04035 | CJ673_01460 | GCA_001572855_01793 | GCA_001572855_01669 | Unannotated protein. | Unannotated protein. | 0.994 |
CJ673_04035 | CJ673_07690 | GCA_001572855_01793 | GCA_001572855_00411 | Unannotated protein. | Unannotated protein. | 0.994 |
CJ673_04035 | CJ673_08155 | GCA_001572855_01793 | GCA_001572855_01469 | Unannotated protein. | Unannotated protein. | 0.884 |
CJ673_04035 | dnaG | GCA_001572855_01793 | GCA_001572855_02003 | Unannotated protein. | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.552 |
CJ673_04035 | polA | GCA_001572855_01793 | GCA_001572855_01188 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
CJ673_04035 | recA | GCA_001572855_01793 | GCA_001572855_00086 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.963 |
CJ673_04035 | topA | GCA_001572855_01793 | GCA_001572855_00090 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.805 |
CJ673_04035 | xth | GCA_001572855_01793 | GCA_001572855_00324 | Unannotated protein. | Unannotated protein. | 0.944 |
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