Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DF188_07545 | hisI | GCA_001572935_00378 | GCA_001572935_01649 | Unannotated protein. | Unannotated protein; In the N-terminal section; belongs to the PRA-CH family. | 0.733 |
DF188_07545 | ribE | GCA_001572935_00378 | GCA_001572935_00061 | Unannotated protein. | Unannotated protein. | 0.656 |
DF188_07545 | rpmE | GCA_001572935_00378 | GCA_001572935_01701 | Unannotated protein. | Unannotated protein; Binds the 23S rRNA. | 0.656 |
DF188_08715 | ribB | GCA_001572935_00480 | GCA_001572935_00230 | Unannotated protein; Belongs to the ribF family. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.560 |
DF188_08715 | ribD | GCA_001572935_00480 | GCA_001572935_00794 | Unannotated protein; Belongs to the ribF family. | Unannotated protein. | 0.790 |
DF188_08715 | ribE | GCA_001572935_00480 | GCA_001572935_00061 | Unannotated protein; Belongs to the ribF family. | Unannotated protein. | 0.938 |
DF188_08715 | ribH | GCA_001572935_00480 | GCA_001572935_00491 | Unannotated protein; Belongs to the ribF family. | Unannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.894 |
GCA_001572935_00059 | mnmG | GCA_001572935_00059 | GCA_001572935_00060 | Unannotated protein. | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.588 |
GCA_001572935_00059 | ribE | GCA_001572935_00059 | GCA_001572935_00061 | Unannotated protein. | Unannotated protein. | 0.424 |
hisI | DF188_07545 | GCA_001572935_01649 | GCA_001572935_00378 | Unannotated protein; In the N-terminal section; belongs to the PRA-CH family. | Unannotated protein. | 0.733 |
hisI | ribD | GCA_001572935_01649 | GCA_001572935_00794 | Unannotated protein; In the N-terminal section; belongs to the PRA-CH family. | Unannotated protein. | 0.430 |
hisI | ribE | GCA_001572935_01649 | GCA_001572935_00061 | Unannotated protein; In the N-terminal section; belongs to the PRA-CH family. | Unannotated protein. | 0.839 |
hisI | rpmE | GCA_001572935_01649 | GCA_001572935_01701 | Unannotated protein; In the N-terminal section; belongs to the PRA-CH family. | Unannotated protein; Binds the 23S rRNA. | 0.919 |
mnmG | GCA_001572935_00059 | GCA_001572935_00060 | GCA_001572935_00059 | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Unannotated protein. | 0.588 |
mnmG | ribE | GCA_001572935_00060 | GCA_001572935_00061 | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Unannotated protein. | 0.605 |
ribA | ribB | GCA_001572935_00134 | GCA_001572935_00230 | Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.998 |
ribA | ribD | GCA_001572935_00134 | GCA_001572935_00794 | Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | Unannotated protein. | 0.982 |
ribA | ribE | GCA_001572935_00134 | GCA_001572935_00061 | Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | Unannotated protein. | 0.994 |
ribA | ribH | GCA_001572935_00134 | GCA_001572935_00491 | Unannotated protein; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | Unannotated protein; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.961 |
ribB | DF188_08715 | GCA_001572935_00230 | GCA_001572935_00480 | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | Unannotated protein; Belongs to the ribF family. | 0.560 |
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