STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DF188_09800Unannotated protein; Belongs to the HpcH/HpaI aldolase family. (840 aa)    
Predicted Functional Partners:
DF188_03685
Unannotated protein; Belongs to the citrate synthase family.
  
 0.971
DF188_03820
Unannotated protein; Belongs to the citrate synthase family.
  
 0.967
DF188_01120
Unannotated protein.
  
 0.953
DF188_06090
Unannotated protein.
  
 
 0.952
DF188_09795
Unannotated protein.
 
  
 0.944
pta
Unannotated protein.
  
 
 0.938
DF188_02775
Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 0.925
ackA-2
Unannotated protein; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
 
 0.924
accD
Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
    
 0.923
DF188_05650
Unannotated protein.
  
 
 0.921
Your Current Organism:
Arcobacter skirrowii
NCBI taxonomy Id: 28200
Other names: A. skirrowii, ATCC 51132, Aliiarcobacter skirrowii, CCUG 10374, CIP 103538, CIP 103588, DSM 7302, LMG 6621, LMG:6621, NCTC 12713, strain Skirrow 449/80
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.