STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NadAUnannotated protein; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. (329 aa)    
Predicted Functional Partners:
DF188_01590
Unannotated protein; Belongs to the NadC/ModD family.
 
 
 0.999
DF188_07495
Unannotated protein.
 
 0.998
DF188_01585
Unannotated protein.
       0.798
DF188_01570
Unannotated protein.
       0.791
lpxC
Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
       0.791
DF188_01580
Unannotated protein.
  
    0.781
thrB
Unannotated protein; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
       0.772
cysE
Unannotated protein.
  
    0.760
ribD
Unannotated protein.
  
  
 0.712
DF188_01605
Unannotated protein.
     
 0.660
Your Current Organism:
Arcobacter skirrowii
NCBI taxonomy Id: 28200
Other names: A. skirrowii, ATCC 51132, Aliiarcobacter skirrowii, CCUG 10374, CIP 103538, CIP 103588, DSM 7302, LMG 6621, LMG:6621, NCTC 12713, strain Skirrow 449/80
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.