Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DF188_03875 | DF188_04455 | GCA_001572935_00534 | GCA_001572935_00933 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein. | 0.607 |
DF188_03875 | DF188_07150 | GCA_001572935_00534 | GCA_001572935_01425 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein. | 0.871 |
DF188_03875 | DF188_09165 | GCA_001572935_00534 | GCA_001572935_01541 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein. | 0.733 |
DF188_03875 | NapG | GCA_001572935_00534 | GCA_001572935_00716 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein. | 0.886 |
DF188_03875 | ilvD | GCA_001572935_00534 | GCA_001572935_01105 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.562 |
DF188_03875 | nuoI | GCA_001572935_00534 | GCA_001572935_00542 | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.850 |
DF188_04455 | DF188_03875 | GCA_001572935_00933 | GCA_001572935_00534 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.607 |
DF188_04455 | DF188_04460 | GCA_001572935_00933 | GCA_001572935_00934 | Unannotated protein. | Unannotated protein. | 0.804 |
DF188_04455 | DF188_07150 | GCA_001572935_00933 | GCA_001572935_01425 | Unannotated protein. | Unannotated protein. | 0.754 |
DF188_04455 | DF188_09165 | GCA_001572935_00933 | GCA_001572935_01541 | Unannotated protein. | Unannotated protein. | 0.471 |
DF188_04455 | GCA_001572935_00376 | GCA_001572935_00933 | GCA_001572935_00376 | Unannotated protein. | Unannotated protein. | 0.549 |
DF188_04455 | NapG | GCA_001572935_00933 | GCA_001572935_00716 | Unannotated protein. | Unannotated protein. | 0.484 |
DF188_04455 | ileS | GCA_001572935_00933 | GCA_001572935_00931 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.507 |
DF188_04455 | ilvD | GCA_001572935_00933 | GCA_001572935_01105 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.535 |
DF188_04455 | murE | GCA_001572935_00933 | GCA_001572935_00935 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.804 |
DF188_04455 | nuoI | GCA_001572935_00933 | GCA_001572935_00542 | Unannotated protein. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.471 |
DF188_04460 | DF188_04455 | GCA_001572935_00934 | GCA_001572935_00933 | Unannotated protein. | Unannotated protein. | 0.804 |
DF188_04460 | ileS | GCA_001572935_00934 | GCA_001572935_00931 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.507 |
DF188_04460 | murE | GCA_001572935_00934 | GCA_001572935_00935 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.804 |
DF188_07150 | DF188_03875 | GCA_001572935_01425 | GCA_001572935_00534 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.871 |
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