Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DF188_02030 | DF188_06385 | GCA_001572935_01584 | GCA_001572935_01868 | Unannotated protein. | Unannotated protein. | 0.918 |
DF188_02030 | rplF | GCA_001572935_01584 | GCA_001572935_01876 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.909 |
DF188_02030 | rplO | GCA_001572935_01584 | GCA_001572935_01873 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.872 |
DF188_02030 | rplR | GCA_001572935_01584 | GCA_001572935_01875 | Unannotated protein. | Unannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.906 |
DF188_06385 | DF188_02030 | GCA_001572935_01868 | GCA_001572935_01584 | Unannotated protein. | Unannotated protein. | 0.918 |
DF188_06385 | DF188_06390 | GCA_001572935_01868 | GCA_001572935_01869 | Unannotated protein. | Unannotated protein. | 0.804 |
DF188_06385 | aspS | GCA_001572935_01868 | GCA_001572935_01867 | Unannotated protein. | Unannotated protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.636 |
DF188_06385 | infA | GCA_001572935_01868 | GCA_001572935_01870 | Unannotated protein. | Unannotated protein; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.574 |
DF188_06385 | map | GCA_001572935_01868 | GCA_001572935_01871 | Unannotated protein. | Unannotated protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.574 |
DF188_06385 | rplF | GCA_001572935_01868 | GCA_001572935_01876 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.573 |
DF188_06385 | rplO | GCA_001572935_01868 | GCA_001572935_01873 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.574 |
DF188_06385 | rplR | GCA_001572935_01868 | GCA_001572935_01875 | Unannotated protein. | Unannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.573 |
DF188_06385 | rpsE | GCA_001572935_01868 | GCA_001572935_01874 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.574 |
DF188_06385 | secY | GCA_001572935_01868 | GCA_001572935_01872 | Unannotated protein. | Unannotated protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.574 |
DF188_06390 | DF188_06385 | GCA_001572935_01869 | GCA_001572935_01868 | Unannotated protein. | Unannotated protein. | 0.804 |
DF188_06390 | aspS | GCA_001572935_01869 | GCA_001572935_01867 | Unannotated protein. | Unannotated protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.650 |
DF188_06390 | infA | GCA_001572935_01869 | GCA_001572935_01870 | Unannotated protein. | Unannotated protein; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.577 |
DF188_06390 | map | GCA_001572935_01869 | GCA_001572935_01871 | Unannotated protein. | Unannotated protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.597 |
DF188_06390 | rplF | GCA_001572935_01869 | GCA_001572935_01876 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.573 |
DF188_06390 | rplO | GCA_001572935_01869 | GCA_001572935_01873 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.574 |
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