STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaBPolysaccharide deacetylase. (386 aa)    
Predicted Functional Partners:
epsH
Glycosyl transferase family 2.
       0.786
SFF89897.1
Conserved hypothetical protein.
       0.774
icaA
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
 0.584
crtI
Phytoene dehydrogenase-related protein.
       0.574
SFF88150.1
Succinoglycan biosynthesis protein ExoA.
  
 
 0.523
SFF88125.1
Succinoglycan biosynthesis protein ExoM.
   
 
  0.495
acsAB
Cellulose synthase 1; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
   
 
  0.495
crtQ
Glycosyl transferase family 2.
   
 
  0.495
SFF89951.1
Feruloyl esterase.
       0.458
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.