Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF76844.1 | mltB_1 | SAMN04488517_10178 | SAMN04488517_10182 | Zinc protease. | Membrane-bound lytic murein transglycosylase B. | 0.564 |
SFF76844.1 | mutL | SAMN04488517_10178 | SAMN04488517_10179 | Zinc protease. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.803 |
SFF76844.1 | ptrA_2 | SAMN04488517_10178 | SAMN04488517_10177 | Zinc protease. | Zinc protease; Belongs to the peptidase M16 family. | 0.998 |
SFF76844.1 | rmuC | SAMN04488517_10178 | SAMN04488517_10180 | Zinc protease. | DNA recombination protein RmuC. | 0.801 |
SFF76844.1 | rnr | SAMN04488517_10178 | SAMN04488517_10181 | Zinc protease. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.673 |
mltB_1 | SFF76844.1 | SAMN04488517_10182 | SAMN04488517_10178 | Membrane-bound lytic murein transglycosylase B. | Zinc protease. | 0.564 |
mltB_1 | mrdB | SAMN04488517_10182 | SAMN04488517_10484 | Membrane-bound lytic murein transglycosylase B. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.422 |
mltB_1 | mutL | SAMN04488517_10182 | SAMN04488517_10179 | Membrane-bound lytic murein transglycosylase B. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.675 |
mltB_1 | ptrA_2 | SAMN04488517_10182 | SAMN04488517_10177 | Membrane-bound lytic murein transglycosylase B. | Zinc protease; Belongs to the peptidase M16 family. | 0.564 |
mltB_1 | rmuC | SAMN04488517_10182 | SAMN04488517_10180 | Membrane-bound lytic murein transglycosylase B. | DNA recombination protein RmuC. | 0.675 |
mltB_1 | rnr | SAMN04488517_10182 | SAMN04488517_10181 | Membrane-bound lytic murein transglycosylase B. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.791 |
mltB_1 | secB | SAMN04488517_10182 | SAMN04488517_101720 | Membrane-bound lytic murein transglycosylase B. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.402 |
mrdB | mltB_1 | SAMN04488517_10484 | SAMN04488517_10182 | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | Membrane-bound lytic murein transglycosylase B. | 0.422 |
mutL | SFF76844.1 | SAMN04488517_10179 | SAMN04488517_10178 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Zinc protease. | 0.803 |
mutL | mltB_1 | SAMN04488517_10179 | SAMN04488517_10182 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Membrane-bound lytic murein transglycosylase B. | 0.675 |
mutL | ptrA_2 | SAMN04488517_10179 | SAMN04488517_10177 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Zinc protease; Belongs to the peptidase M16 family. | 0.803 |
mutL | rmuC | SAMN04488517_10179 | SAMN04488517_10180 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA recombination protein RmuC. | 0.897 |
mutL | rnr | SAMN04488517_10179 | SAMN04488517_10181 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.768 |
ptrA_2 | SFF76844.1 | SAMN04488517_10177 | SAMN04488517_10178 | Zinc protease; Belongs to the peptidase M16 family. | Zinc protease. | 0.998 |
ptrA_2 | mltB_1 | SAMN04488517_10177 | SAMN04488517_10182 | Zinc protease; Belongs to the peptidase M16 family. | Membrane-bound lytic murein transglycosylase B. | 0.564 |
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