STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrRanti-ECFsigma factor, ChrR. (213 aa)    
Predicted Functional Partners:
sigK
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.999
SFG04595.1
Hypothetical protein.
 
  
 0.968
SFG04582.1
Hypothetical protein.
 
  
 0.941
sigM
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.909
pdtaR
Response regulator receiver protein.
   
 
 0.880
SFG04556.1
Short-chain dehydrogenase.
 
   
 0.853
cfa_2
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.620
phr
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.582
SFG62345.1
Protein of unknown function.
   
 
 0.560
SFG62684.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.560
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.