STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG07052.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
SFG60161.1
Hypothetical protein.
  
   
 0.782
lysS
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.780
SFF89482.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.767
SFG38257.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
  
   
 0.741
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.741
rna
Ribonuclease T2; Belongs to the RNase T2 family.
       0.739
SFG47886.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
    0.705
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.690
rnd_1
Ribonuclease D.
  
     0.625
SFF77436.1
SH3-like domain-containing protein.
  
     0.618
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.