STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
accD5propionyl-CoA carboxylase carboxyltransferase subunit. (510 aa)    
Predicted Functional Partners:
accA1_1
Biotin carboxyl carrier protein /biotin carboxylase.
 0.997
accA1_2
3-methylcrotonyl-CoA carboxylase alpha subunit.
 
 0.996
SFF78345.1
methylmalonyl-CoA epimerase.
 
 
 0.971
fadJ_1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.880
birA
Bifunctional protein BirA; BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
 
 
 0.865
scpA_2
methylmalonyl-CoA mutase.
 
   
 0.847
cfiB
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
 0.840
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.821
fadJ_2
Short chain enoyl-CoA hydratase.
  
 
 0.820
mhqE
Glyoxalase family protein.
  
 
 0.791
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.