STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG66787.1Type IV secretion system protein VirB3. (91 aa)    
Predicted Functional Partners:
virB4_2
Type IV secretion system protein VirB4.
 
 
 0.999
ptlE
Type IV secretion system protein VirB8.
 
 
 0.997
ptlG_2
Type IV secretion system protein VirB10.
 
  
 0.987
virB9_2
Type IV secretion system protein VirB9.
 
  
 0.987
SFG66657.1
Type IV secretion system protein VirB6.
 
  
 0.984
SFG66805.1
Type IV secretion system protein VirB2.
 
   
 0.916
SFG66699.1
Type IV secretion system protein VirB5.
 
     0.911
traG_2
Type IV secretion system protein VirD4.
 
   
 0.864
SFG66884.1
Hypothetical protein.
 
     0.831
SFG82417.1
Hypothetical protein.
 
     0.819
Your Current Organism:
Jannaschia rubra
NCBI taxonomy Id: 282197
Other names: CECT 5088, DSM 16279, J. rubra, Jannaschia rubra Macian et al. 2005, strain 4SM3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.