Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIG5292_00756 | NIG5292_00758 | GCA_001049735_00756 | GCA_001049735_00758 | Unannotated protein. | Unannotated protein. | 0.698 |
NIG5292_00756 | lolA | GCA_001049735_00756 | GCA_001049735_01361 | Unannotated protein. | Unannotated protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.623 |
NIG5292_00756 | lptA | GCA_001049735_00756 | GCA_001049735_01129 | Unannotated protein. | Unannotated protein. | 0.479 |
NIG5292_00756 | lptB_2 | GCA_001049735_00756 | GCA_001049735_01130 | Unannotated protein. | Unannotated protein. | 0.998 |
NIG5292_00756 | lptD | GCA_001049735_00756 | GCA_001049735_00754 | Unannotated protein. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.979 |
NIG5292_00756 | lptG | GCA_001049735_00756 | GCA_001049735_00755 | Unannotated protein. | Unannotated protein. | 0.999 |
NIG5292_00756 | pdxA | GCA_001049735_00756 | GCA_001049735_00752 | Unannotated protein. | Unannotated protein; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.836 |
NIG5292_00756 | rsmA | GCA_001049735_00756 | GCA_001049735_00751 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.837 |
NIG5292_00756 | surA | GCA_001049735_00756 | GCA_001049735_00753 | Unannotated protein. | Unannotated protein. | 0.869 |
NIG5292_00758 | NIG5292_00756 | GCA_001049735_00758 | GCA_001049735_00756 | Unannotated protein. | Unannotated protein. | 0.698 |
NIG5292_00758 | lolA | GCA_001049735_00758 | GCA_001049735_01361 | Unannotated protein. | Unannotated protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.485 |
NIG5292_00758 | lptD | GCA_001049735_00758 | GCA_001049735_00754 | Unannotated protein. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.792 |
NIG5292_00758 | lptG | GCA_001049735_00758 | GCA_001049735_00755 | Unannotated protein. | Unannotated protein. | 0.770 |
NIG5292_00758 | pdxA | GCA_001049735_00758 | GCA_001049735_00752 | Unannotated protein. | Unannotated protein; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.690 |
NIG5292_00758 | rsmA | GCA_001049735_00758 | GCA_001049735_00751 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.746 |
NIG5292_00758 | surA | GCA_001049735_00758 | GCA_001049735_00753 | Unannotated protein. | Unannotated protein. | 0.747 |
bamA | lolA | GCA_001049735_00336 | GCA_001049735_01361 | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Unannotated protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.513 |
bamA | lptA | GCA_001049735_00336 | GCA_001049735_01129 | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Unannotated protein. | 0.563 |
bamA | lptB_2 | GCA_001049735_00336 | GCA_001049735_01130 | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Unannotated protein. | 0.595 |
bamA | lptD | GCA_001049735_00336 | GCA_001049735_00754 | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.748 |
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