Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIG5292_00866 | NIG5292_00868 | GCA_001049735_00866 | GCA_001049735_00868 | Unannotated protein. | Unannotated protein. | 0.898 |
NIG5292_00866 | alaS_1 | GCA_001049735_00866 | GCA_001049735_00227 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.664 |
NIG5292_00866 | aspS | GCA_001049735_00866 | GCA_001049735_02106 | Unannotated protein. | Unannotated protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.635 |
NIG5292_00866 | glyQ | GCA_001049735_00866 | GCA_001049735_00867 | Unannotated protein. | Unannotated protein. | 0.999 |
NIG5292_00866 | glyS | GCA_001049735_00866 | GCA_001049735_00865 | Unannotated protein. | Unannotated protein. | 0.884 |
NIG5292_00866 | valS | GCA_001049735_00866 | GCA_001049735_00928 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.701 |
NIG5292_00868 | NIG5292_00866 | GCA_001049735_00868 | GCA_001049735_00866 | Unannotated protein. | Unannotated protein. | 0.898 |
NIG5292_00868 | alaS_1 | GCA_001049735_00868 | GCA_001049735_00227 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.664 |
NIG5292_00868 | glyQ | GCA_001049735_00868 | GCA_001049735_00867 | Unannotated protein. | Unannotated protein. | 0.687 |
NIG5292_00868 | glyS | GCA_001049735_00868 | GCA_001049735_00865 | Unannotated protein. | Unannotated protein. | 0.590 |
accB | glyQ | GCA_001049735_02642 | GCA_001049735_00867 | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Unannotated protein. | 0.678 |
accB | guaA_1 | GCA_001049735_02642 | GCA_001049735_00303 | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.542 |
alaS_1 | NIG5292_00866 | GCA_001049735_00227 | GCA_001049735_00866 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein. | 0.664 |
alaS_1 | NIG5292_00868 | GCA_001049735_00227 | GCA_001049735_00868 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein. | 0.664 |
alaS_1 | aspS | GCA_001049735_00227 | GCA_001049735_02106 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.943 |
alaS_1 | glyQ | GCA_001049735_00227 | GCA_001049735_00867 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein. | 0.814 |
alaS_1 | glyS | GCA_001049735_00227 | GCA_001049735_00865 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein. | 0.704 |
alaS_1 | guaA_1 | GCA_001049735_00227 | GCA_001049735_00303 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.668 |
alaS_1 | hisS | GCA_001049735_00227 | GCA_001049735_02041 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein. | 0.830 |
alaS_1 | valS | GCA_001049735_00227 | GCA_001049735_00928 | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.938 |
page 1 of 4