STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdrUnannotated protein. (401 aa)    
Predicted Functional Partners:
NIG5292_01405
Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.988
bchL
Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
   
 
 0.887
sir
Unannotated protein.
  
 0.860
cprA
Unannotated protein.
  
 
 0.853
rsmD
Unannotated protein.
       0.849
NIG5292_00880
Unannotated protein.
 
 
 0.848
glnA
Unannotated protein.
    
 0.779
puuA
Unannotated protein; Belongs to the glutamine synthetase family.
    
 0.779
fadH
Unannotated protein.
    
 0.770
gdhA_1
Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.751
Your Current Organism:
Nereida ignava
NCBI taxonomy Id: 282199
Other names: CCUG 49433, CECT 5292, CIP 108404, DSM 16309, N. ignava, Nereida ignava Pujalte et al. 2005, strain 2SM4
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