STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvyDUnannotated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (189 aa)    
Predicted Functional Partners:
rpsI
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
 
 
 
 0.972
rpmH
Unannotated protein; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.968
rpmC
Unannotated protein; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.968
rplI
Unannotated protein; Binds to the 23S rRNA.
  
   0.967
rpsK
Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
   0.966
rplO
Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.966
rpsE
Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.966
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.966
rpmG
Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.965
rpmB
Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.965
Your Current Organism:
Nereida ignava
NCBI taxonomy Id: 282199
Other names: CCUG 49433, CECT 5292, CIP 108404, DSM 16309, N. ignava, Nereida ignava Pujalte et al. 2005, strain 2SM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.