STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIG5292_01386Unannotated protein. (70 aa)    
Predicted Functional Partners:
rsmB_2
Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.722
NIG5292_00096
Unannotated protein.
  
     0.710
hisS
Unannotated protein.
  
     0.693
NIG5292_01223
Unannotated protein.
  
     0.667
NIG5292_01388
Unannotated protein.
 
     0.665
NIG5292_01064
Unannotated protein.
  
     0.598
purH
Unannotated protein.
       0.583
NIG5292_00329
Unannotated protein.
  
     0.546
lspA
Unannotated protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.489
NIG5292_02400
Unannotated protein.
  
     0.459
Your Current Organism:
Nereida ignava
NCBI taxonomy Id: 282199
Other names: CCUG 49433, CECT 5292, CIP 108404, DSM 16309, N. ignava, Nereida ignava Pujalte et al. 2005, strain 2SM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.