Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIG5292_00645 | NIG5292_01404 | GCA_001049735_00645 | GCA_001049735_01403 | Unannotated protein. | Unannotated protein. | 0.564 |
NIG5292_01403 | NIG5292_01404 | GCA_001049735_01402 | GCA_001049735_01403 | Unannotated protein. | Unannotated protein. | 0.862 |
NIG5292_01403 | NIG5292_01405 | GCA_001049735_01402 | GCA_001049735_01404 | Unannotated protein. | Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.541 |
NIG5292_01403 | gltB | GCA_001049735_01402 | GCA_001049735_01120 | Unannotated protein. | Unannotated protein. | 0.558 |
NIG5292_01404 | NIG5292_00645 | GCA_001049735_01403 | GCA_001049735_00645 | Unannotated protein. | Unannotated protein. | 0.564 |
NIG5292_01404 | NIG5292_01403 | GCA_001049735_01403 | GCA_001049735_01402 | Unannotated protein. | Unannotated protein. | 0.862 |
NIG5292_01404 | NIG5292_01405 | GCA_001049735_01403 | GCA_001049735_01404 | Unannotated protein. | Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.539 |
NIG5292_01404 | cobJ | GCA_001049735_01403 | GCA_001049735_00983 | Unannotated protein. | Unannotated protein. | 0.552 |
NIG5292_01404 | cobQ | GCA_001049735_01403 | GCA_001049735_00937 | Unannotated protein. | Unannotated protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.490 |
NIG5292_01404 | cobS_1 | GCA_001049735_01403 | GCA_001049735_00562 | Unannotated protein. | Unannotated protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.514 |
NIG5292_01404 | cobU | GCA_001049735_01403 | GCA_001049735_00563 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.467 |
NIG5292_01404 | cysG | GCA_001049735_01403 | GCA_001049735_00699 | Unannotated protein. | Unannotated protein; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. | 0.484 |
NIG5292_01404 | gltB | GCA_001049735_01403 | GCA_001049735_01120 | Unannotated protein. | Unannotated protein. | 0.500 |
NIG5292_01404 | hom | GCA_001049735_01403 | GCA_001049735_00521 | Unannotated protein. | Unannotated protein. | 0.483 |
NIG5292_01405 | NIG5292_01403 | GCA_001049735_01404 | GCA_001049735_01402 | Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Unannotated protein. | 0.541 |
NIG5292_01405 | NIG5292_01404 | GCA_001049735_01404 | GCA_001049735_01403 | Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Unannotated protein. | 0.539 |
NIG5292_01405 | gltB | GCA_001049735_01404 | GCA_001049735_01120 | Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Unannotated protein. | 0.919 |
cobJ | NIG5292_01404 | GCA_001049735_00983 | GCA_001049735_01403 | Unannotated protein. | Unannotated protein. | 0.552 |
cobJ | cobQ | GCA_001049735_00983 | GCA_001049735_00937 | Unannotated protein. | Unannotated protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.996 |
cobJ | cobS_1 | GCA_001049735_00983 | GCA_001049735_00562 | Unannotated protein. | Unannotated protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.983 |
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