STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmEUnannotated protein. (421 aa)    
Predicted Functional Partners:
araQ_1
Unannotated protein.
 
  0.995
araP
Unannotated protein.
 
  0.971
ugpC_1
Unannotated protein; Belongs to the ABC transporter superfamily.
 
  0.918
rafA
Unannotated protein.
 
    0.905
NIG5292_01533
Unannotated protein.
 
   
 0.890
kdgR
Unannotated protein.
 
    0.848
ugpC_2
Unannotated protein; Belongs to the ABC transporter superfamily.
   
  0.801
ugpC_3
Unannotated protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
   
  0.801
ugpC_4
Unannotated protein.
   
  0.801
ugpC_5
Unannotated protein; Belongs to the ABC transporter superfamily.
   
  0.801
Your Current Organism:
Nereida ignava
NCBI taxonomy Id: 282199
Other names: CCUG 49433, CECT 5292, CIP 108404, DSM 16309, N. ignava, Nereida ignava Pujalte et al. 2005, strain 2SM4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.