Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgAUnannotated protein. (221 aa)    
Predicted Functional Partners:
cmdD
Unannotated protein.
  
 0.947
NIG5292_02029
Unannotated protein.
 
     0.912
gltB
Unannotated protein.
     
 0.871
bcsA
Unannotated protein.
    
 0.681
cprA
Unannotated protein.
  
 0.660
fadJ
Unannotated protein.
  
 0.621
NIG5292_00526
Unannotated protein.
      
 0.618
NIG5292_00528
Unannotated protein.
      
 0.618
icaR
Unannotated protein.
      
 0.618
NIG5292_01253
Unannotated protein.
      
 0.618
Your Current Organism:
Nereida ignava
NCBI taxonomy Id: 282199
Other names: CCUG 49433, CECT 5292, CIP 108404, DSM 16309, N. ignava, Nereida ignava Pujalte et al. 2005, strain 2SM4
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