Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NIG5292_02585 | NIG5292_02587 | GCA_001049735_02584 | GCA_001049735_02586 | Unannotated protein. | Unannotated protein. | 0.986 |
NIG5292_02585 | NIG5292_02588 | GCA_001049735_02584 | GCA_001049735_02587 | Unannotated protein. | Unannotated protein. | 0.983 |
NIG5292_02585 | NIG5292_02589 | GCA_001049735_02584 | GCA_001049735_02588 | Unannotated protein. | Unannotated protein. | 0.992 |
NIG5292_02585 | NIG5292_02591 | GCA_001049735_02584 | GCA_001049735_02590 | Unannotated protein. | Unannotated protein. | 0.962 |
NIG5292_02585 | NIG5292_02597 | GCA_001049735_02584 | GCA_001049735_02596 | Unannotated protein. | Unannotated protein. | 0.934 |
NIG5292_02585 | acsF | GCA_001049735_02584 | GCA_001049735_02585 | Unannotated protein. | Unannotated protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.995 |
NIG5292_02585 | bchL | GCA_001049735_02584 | GCA_001049735_02592 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.888 |
NIG5292_02585 | bchM | GCA_001049735_02584 | GCA_001049735_02591 | Unannotated protein. | Unannotated protein. | 0.976 |
NIG5292_02585 | bchN | GCA_001049735_02584 | GCA_001049735_02595 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.967 |
NIG5292_02585 | puhA | GCA_001049735_02584 | GCA_001049735_02589 | Unannotated protein. | Unannotated protein. | 0.965 |
NIG5292_02587 | NIG5292_02585 | GCA_001049735_02586 | GCA_001049735_02584 | Unannotated protein. | Unannotated protein. | 0.986 |
NIG5292_02587 | NIG5292_02588 | GCA_001049735_02586 | GCA_001049735_02587 | Unannotated protein. | Unannotated protein. | 0.968 |
NIG5292_02587 | NIG5292_02589 | GCA_001049735_02586 | GCA_001049735_02588 | Unannotated protein. | Unannotated protein. | 0.976 |
NIG5292_02587 | NIG5292_02591 | GCA_001049735_02586 | GCA_001049735_02590 | Unannotated protein. | Unannotated protein. | 0.930 |
NIG5292_02587 | NIG5292_02597 | GCA_001049735_02586 | GCA_001049735_02596 | Unannotated protein. | Unannotated protein. | 0.892 |
NIG5292_02587 | acsF | GCA_001049735_02586 | GCA_001049735_02585 | Unannotated protein. | Unannotated protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.986 |
NIG5292_02587 | bchL | GCA_001049735_02586 | GCA_001049735_02592 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.794 |
NIG5292_02587 | bchM | GCA_001049735_02586 | GCA_001049735_02591 | Unannotated protein. | Unannotated protein. | 0.883 |
NIG5292_02587 | bchN | GCA_001049735_02586 | GCA_001049735_02595 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.933 |
NIG5292_02587 | puhA | GCA_001049735_02586 | GCA_001049735_02589 | Unannotated protein. | Unannotated protein. | 0.958 |
page 1 of 6