STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO04416.1L-ascorbate metabolism protein UlaG, beta-lactamase superfamily; Manually curated; Belongs to the UPF0173 family. (229 aa)    
Predicted Functional Partners:
SIN86550.1
Transcriptional antiterminator, BglG family.
    
  0.835
SIN95839.1
Transcriptional antiterminator.
    
  0.835
SIO04446.1
Predicted transcriptional regulator containing CBS domains.
     
 0.791
SIO04469.1
Phosphoesterase RecJ domain-containing protein.
     
 0.760
SIN86459.1
PTS system IIC component, L-Asc family.
  
 
 0.637
SIN86530.1
PTS system IIB component, L-Asc family.
  
 
 0.554
dinB
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.549
SIO26008.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
    
  0.485
SIN85723.1
PTS system, galactitol-specific IIB component.
  
 
 0.477
SIO18342.1
Transcriptional antiterminator, BglG family.
    
  0.438
Your Current Organism:
Carnobacterium alterfunditum
NCBI taxonomy Id: 28230
Other names: ACAM 313, ATCC 49837, C. alterfunditum, CCUG 34643, CIP 105796, Carnibacterium alterfunditum, DSM 5972, IFO 15548, JCM 12498, LMG 13520, LMG:13520, NBRC 15548, strain pf4
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