STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO25102.1Protein N-acetyltransferase, RimJ/RimL family. (174 aa)    
Predicted Functional Partners:
SIO25123.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
     
 0.857
SIO21288.1
3-hydroxyacyl-CoA dehydrogenase.
    
  0.727
SIN89393.1
L-amino acid N-acyltransferase YncA.
 
    0.622
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.539
SIO25158.1
Phosphotransacetylase.
    
 0.466
SIO17905.1
Pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.450
SIO25138.1
Hypothetical protein.
       0.440
SIO03615.1
Acylphosphatase.
  
  
  0.416
Your Current Organism:
Carnobacterium alterfunditum
NCBI taxonomy Id: 28230
Other names: ACAM 313, ATCC 49837, C. alterfunditum, CCUG 34643, CIP 105796, Carnibacterium alterfunditum, DSM 5972, IFO 15548, JCM 12498, LMG 13520, LMG:13520, NBRC 15548, strain pf4
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