A0A267GJ10 protein (Macrostomum lignano) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A267GJ10

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

A0A267GHL1

0.972

A0A267EHC7

0.959

A0A267G561

0.959

A0A267E8D1

0.761

A0A267EAT3

0.761

A0A267EED8

0.761

A0A267F054

0.717

A0A267FGJ6

0.717

A0A267DXD3

0.626

A0A267E8J4

0.626

Your Current Organism:

Macrostomum lignano

NCBI taxonomy Id: 282301
Other names: M. lignano

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A267DXD3	A0A267EHC7	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A267DXD3	A0A267G561	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A267DXD3	A0A267GHL1	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A267DXD3	A0A267GJ10	Uncharacterized protein.	Uncharacterized protein.	0.626
A0A267E8D1	A0A267EHC7	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267E8D1	A0A267G561	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267E8D1	A0A267GHL1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A267E8D1	A0A267GJ10	Uncharacterized protein.	Uncharacterized protein.	0.761
A0A267E8J4	A0A267EHC7	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A267E8J4	A0A267G561	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A267E8J4	A0A267GHL1	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A267E8J4	A0A267GJ10	Uncharacterized protein.	Uncharacterized protein.	0.626
A0A267EAT3	A0A267EHC7	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267EAT3	A0A267G561	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267EAT3	A0A267GHL1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A267EAT3	A0A267GJ10	Uncharacterized protein.	Uncharacterized protein.	0.761
A0A267EED8	A0A267EHC7	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267EED8	A0A267G561	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A267EED8	A0A267GHL1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A267EED8	A0A267GJ10	Uncharacterized protein.	Uncharacterized protein.	0.761