A0A267GJC0 protein (Macrostomum lignano) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A267GJC0

Uncharacterized protein. (175 aa)

Predicted Functional Partners:

A0A267DZ10

0.672

A0A1I8GJM8

0.664

A0A1I8HT96

0.664

A0A1I8IPR9

0.664

A0A267E802

0.630

A0A267GUQ3

0.630

A0A267F6F4

0.587

A0A267FK19

0.587

A0A267G3I4

0.587

A0A267E1L3

0.550

Your Current Organism:

Macrostomum lignano

NCBI taxonomy Id: 282301
Other names: M. lignano

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1I8GJM8	A0A267E1L3	Brix domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.965
A0A1I8GJM8	A0A267E802	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A1I8GJM8	A0A267F6F4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8GJM8	A0A267FK19	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8GJM8	A0A267G3I4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8GJM8	A0A267GJC0	Brix domain-containing protein.	Uncharacterized protein.	0.664
A0A1I8GJM8	A0A267GUQ3	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A1I8HT96	A0A267E1L3	Brix domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.965
A0A1I8HT96	A0A267E802	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A1I8HT96	A0A267F6F4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8HT96	A0A267FK19	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8HT96	A0A267G3I4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8HT96	A0A267GJC0	Brix domain-containing protein.	Uncharacterized protein.	0.664
A0A1I8HT96	A0A267GUQ3	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A1I8IPR9	A0A267E1L3	Brix domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.965
A0A1I8IPR9	A0A267E802	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A1I8IPR9	A0A267F6F4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8IPR9	A0A267FK19	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8IPR9	A0A267G3I4	Brix domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.971
A0A1I8IPR9	A0A267GJC0	Brix domain-containing protein.	Uncharacterized protein.	0.664