STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB99193.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (99 aa)    
Predicted Functional Partners:
SDC83806.1
PAS domain S-box-containing protein.
  
 
 0.994
SDC35695.1
GAF domain-containing protein.
  
 
 0.937
SDC04879.1
Serine/threonine-protein kinase RsbW.
 
 0.932
SDC04705.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.905
SDC03100.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.889
SDC00016.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.887
SDC08112.1
Flagellar motor switch protein FliN/FliY.
  
   0.877
SDC37787.1
PAS domain S-box-containing protein.
  
 
 0.815
SDC68858.1
Response regulator receiver domain-containing protein.
 
 0.801
SDC06168.1
Stage II sporulation protein E (SpoIIE).
  
 0.767
Your Current Organism:
Geotoga petraea
NCBI taxonomy Id: 28234
Other names: ATCC 51226, G. petraea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.