STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC43240.1Predicted Zn-dependent peptidase. (407 aa)    
Predicted Functional Partners:
SDC24164.1
NADH dehydrogenase subunit F.
   
 
 0.921
SDC62834.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 
 0.921
SDC74332.1
Glutamate synthase (NADPH/NADH) small chain.
  
 
 0.918
SDC74371.1
NADH-quinone oxidoreductase subunit D; Belongs to the complex I 49 kDa subunit family.
   
 
 0.915
SDC72021.1
Uncharacterized conserved protein, DUF362 family.
  
 
 0.903
SDC74403.1
NADH-quinone oxidoreductase subunit C.
   
 
 0.897
atpH
ATP synthase F1 subcomplex delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.869
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.864
SDC06094.1
Thioredoxin-like [2Fe-2S] ferredoxin.
   
 
 0.850
SDC06205.1
Thioredoxin-like [2Fe-2S] ferredoxin.
   
 
 0.850
Your Current Organism:
Geotoga petraea
NCBI taxonomy Id: 28234
Other names: ATCC 51226, G. petraea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.