STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC76213.14-hydroxy-tetrahydrodipicolinate reductase. (338 aa)    
Predicted Functional Partners:
SDC76331.1
D-ornithine 4,5-aminomutase S subunit.
 
  
  0.993
SDC76383.1
D-ornithine 4,5-aminomutase E subunit.
 
  
  0.993
SDB96742.1
Beta-lysine 5,6-aminomutase beta subunit.
 
  
  0.941
SDC76267.1
Hypothetical protein.
 
     0.906
SDC76293.1
Cysteine synthase.
 
     0.906
SDC05791.1
Conserved hypothetical protein.
 
     0.800
SDC08791.1
Predicted amino acid racemase.
 
   
 0.685
SDC76171.1
Hypothetical protein.
       0.472
Your Current Organism:
Geotoga petraea
NCBI taxonomy Id: 28234
Other names: ATCC 51226, G. petraea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.