STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC89118.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)    
Predicted Functional Partners:
SDC80107.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.939
SDC89052.1
Predicted dehydrogenase.
 
 
 0.937
SDC89161.1
Winged helix-turn-helix DNA-binding.
  
 
 0.916
SDC89087.1
Nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.882
SDC89195.1
dTDP-glucose 4,6-dehydratase.
 
 
 0.817
SDC89262.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
  
 
 0.769
SDB99036.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.713
SDB98678.1
Transferase hexapeptide (six repeat-containing protein).
  0.701
SDC80141.1
UDP-glucose 4-epimerase.
 
 
 0.672
SDC79824.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.652
Your Current Organism:
Geotoga petraea
NCBI taxonomy Id: 28234
Other names: ATCC 51226, G. petraea
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