Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARM74706.1Helix-turn-helix domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)    
Predicted Functional Partners:
ARM76995.1
Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
ARM76502.1
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
ARM74709.1
Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.608
ARM75474.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
ARM74708.1
Acetoacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.599
ARM76862.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
ARM74957.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
ARM76321.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
ARM75402.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
ARM75248.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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