Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ARM75126.14Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)    
Predicted Functional Partners:
ARM75134.1
Flagellar assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.799
ARM75571.1
(Fe-S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.742
B6F84_03610
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
ARM75089.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.735
ARM75661.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
ARM76085.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
ARM75125.1
GHMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.725
ARM75651.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.723
ARM76400.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
ARM75011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.712
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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