Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARM75292.1Hydrogenase expression/formation protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)    
Predicted Functional Partners:
ARM75294.1
Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
ARM75344.1
Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
ARM75288.1
Carbamoyltransferase HypF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
ARM75293.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.936
ARM75297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.858
ARM75289.1
Hydrogenase maturation protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.811
ARM75343.1
Hydrogenase assembly protein HypC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.788
ARM75290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
ARM75291.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.772
ARM75296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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