Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARM77083.1L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)    
Predicted Functional Partners:
ARM76858.1
O-acetyl-ADP-ribose deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.621
ARM75575.1
Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
ARM75576.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
ARM75574.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.443
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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