spt5 protein (Acidianus manzaensis) - STRING interaction network

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Score

spt5

Transcription elongation factor Spt5; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (152 aa)

Predicted Functional Partners:

rpl11

0.997

rpl1

0.996

rpl10

0.996

ARM75838.1

0.988

rpoD

0.983

rps10

0.982

rps3

0.982

spt4

0.976

rpl6

0.973

rpl30

0.969

Your Current Organism:

Acidianus manzaensis

NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARM75838.1	rpl1	B6F84_07185	B6F84_10915	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.982
ARM75838.1	rpl10	B6F84_07185	B6F84_10920	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.983
ARM75838.1	rpl11	B6F84_07185	B6F84_10910	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.983
ARM75838.1	rpl30	B6F84_07185	B6F84_07830	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
ARM75838.1	rpl6	B6F84_07185	B6F84_07805	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.981
ARM75838.1	rpoD	B6F84_07185	B6F84_06725	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ARM75838.1	rps10	B6F84_07185	B6F84_07140	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.988
ARM75838.1	rps3	B6F84_07185	B6F84_07755	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.986
ARM75838.1	spt4	B6F84_07185	B6F84_06990	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-binding protein; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.	0.881
ARM75838.1	spt5	B6F84_07185	B6F84_10905	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor Spt5; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.988
rpl1	ARM75838.1	B6F84_10915	B6F84_07185	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
rpl1	rpl10	B6F84_10915	B6F84_10920	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rpl1	rpl11	B6F84_10915	B6F84_10910	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.999
rpl1	rpl30	B6F84_10915	B6F84_07830	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
rpl1	rpl6	B6F84_10915	B6F84_07805	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.997
rpl1	rpoD	B6F84_10915	B6F84_06725	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
rpl1	rps10	B6F84_10915	B6F84_07140	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.990
rpl1	rps3	B6F84_10915	B6F84_07755	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.990
rpl1	spt5	B6F84_10915	B6F84_10905	50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	Transcription elongation factor Spt5; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.	0.996
rpl10	ARM75838.1	B6F84_10920	B6F84_07185	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983