nac protein (Acidianus manzaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nac

Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (117 aa)

Predicted Functional Partners:

rps3ae

0.973

rps24e

0.968

rps19e

0.967

rps3

0.966

rpl29

0.960

rps4e

0.960

rps19p

0.959

rps10

0.958

ARM76473.1

0.958

rpl34e

0.957

Your Current Organism:

Acidianus manzaensis

NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARM76473.1	nac	B6F84_10875	B6F84_11770	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	0.958
ARM76473.1	rpl29	B6F84_10875	B6F84_07760	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	0.995
ARM76473.1	rpl34e	B6F84_10875	B6F84_07850	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L34e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family.	0.991
ARM76473.1	rps10	B6F84_10875	B6F84_07140	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.986
ARM76473.1	rps19e	B6F84_10875	B6F84_10860	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
ARM76473.1	rps19p	B6F84_10875	B6F84_07745	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.986
ARM76473.1	rps24e	B6F84_10875	B6F84_06900	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family.	0.994
ARM76473.1	rps3	B6F84_10875	B6F84_07755	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.985
ARM76473.1	rps3ae	B6F84_10875	B6F84_07605	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3ae; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family.	0.986
ARM76473.1	rps4e	B6F84_10875	B6F84_07785	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS4 family.	0.994
nac	ARM76473.1	B6F84_11770	B6F84_10875	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	50S ribosomal protein L31e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
nac	rpl29	B6F84_11770	B6F84_07760	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	0.960
nac	rpl34e	B6F84_11770	B6F84_07850	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	50S ribosomal protein L34e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family.	0.957
nac	rps10	B6F84_11770	B6F84_07140	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.958
nac	rps19e	B6F84_11770	B6F84_10860	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.967
nac	rps19p	B6F84_11770	B6F84_07745	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.959
nac	rps24e	B6F84_11770	B6F84_06900	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S24e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family.	0.968
nac	rps3	B6F84_11770	B6F84_07755	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.966
nac	rps3ae	B6F84_11770	B6F84_07605	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S3ae; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family.	0.973
nac	rps4e	B6F84_11770	B6F84_07785	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.	30S ribosomal protein S4e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS4 family.	0.960