Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARM76833.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
ARM76834.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
ARM76781.1
Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
ARM76780.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.925
ARM74627.1
Biotin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
ARM76779.1
Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.588
ARM76768.1
Heterodisulfide reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.567
ARM76789.1
Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
ARM76767.1
Heterodisulfide reductase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.535
ARM76764.1
Sulfur reduction protein DsrE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.524
ARM76778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.497
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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