Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ARM76928.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)    
Predicted Functional Partners:
ARM74804.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.666
ARM74913.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.627
ARM76693.1
Peptidase S53; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
ARM74981.1
Peptidase S53; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
ARM76189.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
ARM76731.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.564
ARM76178.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
ARM76930.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.545
ARM74867.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
ARM76852.1
Peptidase S53; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
Your Current Organism:
Acidianus manzaensis
NCBI taxonomy Id: 282676
Other names: A. manzaensis, NBRC 100595, strain NA-1
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